R statistics/Installation - Revision history

Neteler: /* Linux */ +install.packages("terra")

2024-03-18T11:46:43Z

Linux: +install.packages("terra")

← Older revision		Revision as of 11:46, 18 March 2024
Line 19:		Line 19:
	Once those are installed start "<tt>R</tt>" at the command prompt and install the <tt>rgrass</tt> library:		Once those are installed start "<tt>R</tt>" at the command prompt and install the <tt>rgrass</tt> library:

	install.packages("rgrass", dependencies = TRUE)		<source lang="bash">
			install.packages("rgrass", dependencies = TRUE)
			install.packages("terra")
			</source>

	* [https://cran.r-project.org/bin/linux/debian/ Debian] and [https://cran.r-project.org/bin/linux/ubuntu/ Ubuntu] specific help is also available from the R-project website.		* [https://cran.r-project.org/bin/linux/debian/ Debian] and [https://cran.r-project.org/bin/linux/ubuntu/ Ubuntu] specific help is also available from the R-project website.
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	<source lang="bash">		<source lang="bash">
	install.packages("rgrass", dependencies = TRUE)		install.packages("rgrass", dependencies = TRUE)
			install.packages("terra")
	</source>		</source>

⚠️Carolx: /* Mac OSX */

2023-04-21T21:32:34Z

Mac OSX

← Older revision		Revision as of 21:32, 21 April 2023
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	'''Startup of GRASS from within R:'''		'''Startup of GRASS from within R:'''

	First you need to find the path to the GRASS binaries: Control-click on the GRASS.app and you'll get a popup menu; select "Show Package Contents" - this opens you to the directory structure. Go to Contents->~~MacOS~~ which would be "GISBASE"; So, in my case, the "gisBase" parameter is "/HD/Applications/Grass-8.2.app/Contents/~~MacOS~~". If you Command-click at the top of the window on the folder icon beside "~~MacOS~~" (from the line above this one), you can see the full path.		First you need to find the path to the GRASS binaries: Control-click on the GRASS.app and you'll get a popup menu; select "Show Package Contents" - this opens you to the directory structure. Go to Contents->Resources which would be "GISBASE"; So, in my case, the "gisBase" parameter is "/HD/Applications/Grass-8.2.app/Contents/Resources". If you Command-click at the top of the window on the folder icon beside "Resources" (from the line above this one), you can see the full path.

	Now we can run GRASS from within a R session:		Now we can run GRASS from within a R session:
Line 51:		Line 51:
	<source lang="bash">		<source lang="bash">
	library(rgrass)		library(rgrass)
	initGRASS(gisBase ='/Applications~~/GRASS~~/GRASS-8.2.app/Contents/~~MacOS~~',		initGRASS(gisBase ='/Applications/GRASS-8.2.app/Contents/Resources',
	location = 'nc_spm_08_grass7',		location = 'nc_spm_08_grass7',
	mapset = 'user1',		mapset = 'user1',
	gisDbase = '/Users/~~Lars~~/Documents~~/Biologi~~/grassdata',		gisDbase = '/Users/carol/Documents/grassdata',
	override = TRUE)		override = TRUE)
	</source>		</source>

Veroandreo: /* Mac OSX */ change location name

2023-04-19T18:37:45Z

Mac OSX: change location name

← Older revision		Revision as of 18:37, 19 April 2023
Line 52:		Line 52:
	library(rgrass)		library(rgrass)
	initGRASS(gisBase ='/Applications/GRASS/GRASS-8.2.app/Contents/MacOS',		initGRASS(gisBase ='/Applications/GRASS/GRASS-8.2.app/Contents/MacOS',
	location = '~~geostat2012_ll~~', mapset = 'user1',		location = 'nc_spm_08_grass7',
	gisDbase = '/Users/Lars/Documents/Biologi/grassdata', override = TRUE)		mapset = 'user1',
			gisDbase = '/Users/Lars/Documents/Biologi/grassdata',
			override = TRUE)
	</source>		</source>

Veroandreo: nest OSs within Installation section

2023-04-19T18:33:37Z

nest OSs within Installation section

← Older revision		Revision as of 18:33, 19 April 2023
Line 6:		Line 6:

	See the overview here: https://cran.r-project.org/web/packages/rgrass/index.html		See the overview here: https://cran.r-project.org/web/packages/rgrass/index.html

			=== Installation ===

	==== Linux ====		==== Linux ====

Veroandreo: /* Mac OSX */ clean-up 3

2023-04-19T18:31:54Z

Mac OSX: clean-up 3

← Older revision		Revision as of 18:31, 19 April 2023
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	==== Mac OSX ====		==== Mac OSX ====

	Start an R session~~, then~~		Start an R session and try:

	* for install.packages() you might have to rely on building packages from source code. try:
	<source lang="bash">		<source lang="bash">
	R

	install.packages("rgrass", type="source", dependencies = TRUE)		install.packages("rgrass", type="source", dependencies = TRUE)
	</source>		</source>

Veroandreo: clean-up 2

2023-04-19T18:30:38Z

clean-up 2

← Older revision		Revision as of 18:30, 19 April 2023
Line 3:		Line 3:
	R and many of its packages are pre-built and distributed through the CRAN network of mirrors. In addition many Linux distributions pre-package R and a number of the most popular libraries.		R and many of its packages are pre-built and distributed through the CRAN network of mirrors. In addition many Linux distributions pre-package R and a number of the most popular libraries.

	==== Status of "rgrass~~" packages =~~===		=== Status of rgrass package ===

	See overview here: https://cran.r-project.org/web/packages/rgrass/index~~.html~~		See the overview here: https://cran.r-project.org/web/packages/rgrass/index.html

	~~==== Source packages ====~~

	~~From the R console first pick a local mirror:~~
	~~chooseCRANmirror()~~

	~~you can then see which repos has been picked with~~
	~~options("repos")~~

	~~To permanently save the mirror site add it to <tt>~/.Rprofile</tt>. For example:~~
	~~options(repos=c(CRAN="<nowiki>http://cran.stat.auckland.ac.nz</nowiki>"))~~

	~~and then run <tt>install.packages()</tt> as in the Quick Start section above.~~

	~~For more information see http://cran.r-project.org/doc/manuals/R-admin~~.html

	==== Linux ====		==== Linux ====
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	===== RPM based =====		===== RPM based =====

	* '''RedHat, Fedora, openSuse, ...''' and similar distros: ~~take the latest '''''R''''' RPM and install it~~		* '''RedHat, Fedora, openSuse, ...''' and similar distros:

	''R~~'' and a number of pre-build cran packages are already present in the main repositories. Start with:~~		# sudo dnf install R

	~~# sudo dnf install~~ R-core R-core-devel R-~~XML~~		This R RPM is a meta-package. It has no content but ensures that the following components are installed: R-core, R-core-devel, R-java, R-java-devel, libRmath, libRmath-devel. Once those are installed, start "<tt>R</tt>" and install the <tt>rgrass</tt> library:

	Once those are installed, start "<tt>R</tt>" ~~at the command prompt~~ and install the <tt>rgrass</tt> library:

	<source lang="bash">		<source lang="bash">
	R

	install.packages("rgrass", dependencies = TRUE)		install.packages("rgrass", dependencies = TRUE)
	</source>		</source>

	'''Usage:''' You have the best user experience if you launch R or RStudio within a running GRASS GIS session (then R automatically recognizes the current settings of the [[Computational region]] and "sees" the GRASS maps).

	==== Mac OSX ====		==== Mac OSX ====
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	or install Task View 'Spatial' - Analysis of Spatial Data		or install Task View 'Spatial' - Analysis of Spatial Data
	install.packages("ctv")		install.packages("ctv")
	library("ctv")		library(ctv)
	install.views("Spatial")		install.views("Spatial")

Line 103:		Line 82:
	In winGRASS ([https://grass.osgeo.org/download/windows/#standalone-installers standalone installer] and [https://grass.osgeo.org/download/windows/#OSGeo4W OSGeo4W]) the installation path of R and RStudio are dynamically loaded into PATH.		In winGRASS ([https://grass.osgeo.org/download/windows/#standalone-installers standalone installer] and [https://grass.osgeo.org/download/windows/#OSGeo4W OSGeo4W]) the installation path of R and RStudio are dynamically loaded into PATH.

	* Start winGRASS, bring the winGRASS-windows console in front and type ''R'' for opening a R-session (command line mode) inside a GRASS-session.		* Start winGRASS, bring the winGRASS-windows console in front and type ''R'' for opening an R session (command line mode) inside a GRASS session.
	* Start winGRASS, bring the winGRASS-windows console in front and type ''RGui'' for opening a R-session (GUI mode) inside a GRASS-session.		* Start winGRASS, bring the winGRASS-windows console in front and type ''RGui'' for opening an R session (GUI mode) inside a GRASS session.

	[[Category:Installation]]		[[Category:Installation]]

Veroandreo: clean-up no needed stuff

2023-04-19T15:53:14Z

clean-up no needed stuff

← Older revision		Revision as of 15:53, 19 April 2023
Line 1:		Line 1:
	First of all you need to install '''''R''''' ~~onto~~ your system.		First of all you need to install '''''R''''' in your system.

	R and many of its ~~addon~~ packages are pre-built and distributed through the CRAN network of mirrors. In addition many Linux distributions ~~prepackage~~ R and a number of the most popular ~~addon toolboxes.~~		R and many of its packages are pre-built and distributed through the CRAN network of mirrors. In addition many Linux distributions pre-package R and a number of the most popular libraries.

	All the necessary functions for the GRASS GIS interface are in packages on CRAN, so that on Linux/Unix (or Mac OSX) installing '''rgdal''' from source with PROJ and GDAL installed, or Windows installing from binary, the required packages are: '''sp'''; '''maptools'''; '''rgdal'''; '''spgrass''' - all on CRAN.

	==== Status of "rgrass" packages ====		==== Status of "rgrass" packages ====
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	# apt-get install r-base r-cran-vr r-cran-rodbc r-cran-xml		# apt-get install r-base r-cran-vr r-cran-rodbc r-cran-xml

	Once those are installed start "<tt>R</tt>" at the command prompt and install the ~~libraries not packaged by the OS:~~		Once those are installed start "<tt>R</tt>" at the command prompt and install the <tt>rgrass</tt> library:
	~~: ''n.b. <tt>r-cran-sp</tt> is now shipped as an official Debian/Ubuntu package and can be installed with~~ <tt>~~apt~~</tt> ~~as above''~~

	~~install.packages("sp")~~
	~~install.packages("gstat")~~

	~~You can install the ''rgdal'' CRAN package directly~~:
	~~install.packages("rgdal")~~

	~~And finally:~~
	install.packages("rgrass", dependencies = TRUE)		install.packages("rgrass", dependencies = TRUE)

Line 54:		Line 44:
	# sudo dnf install R-core R-core-devel R-XML		# sudo dnf install R-core R-core-devel R-XML

	Once those are installed, start ~~as normal user~~ "<tt>R</tt>" at the command prompt and install the ~~libraries not packaged by the distro provider~~:		Once those are installed, start "<tt>R</tt>" at the command prompt and install the <tt>rgrass</tt> library:

	<source lang="bash">		<source lang="bash">
Line 62:		Line 52:
	</source>		</source>

	'''Usage:''' You have the best user experience if you launch R within a running GRASS GIS session (then R automatically recognizes the current settings of the [[Computational region]] and "sees" the GRASS maps).		'''Usage:''' You have the best user experience if you launch R or RStudio within a running GRASS GIS session (then R automatically recognizes the current settings of the [[Computational region]] and "sees" the GRASS maps).

	==== Mac OSX ====		==== Mac OSX ====

	Start a R session, then		Start an R session, then

	* for install.packages() you might have to rely on building packages from source code. try:		* for install.packages() you might have to rely on building packages from source code. try:
Line 82:		Line 72:

	<source lang="bash">		<source lang="bash">
			library(rgrass)
	initGRASS(gisBase ='/Applications/GRASS/GRASS-8.2.app/Contents/MacOS',		initGRASS(gisBase ='/Applications/GRASS/GRASS-8.2.app/Contents/MacOS',
	location = 'geostat2012_ll', mapset = 'user1',		location = 'geostat2012_ll', mapset = 'user1',
Line 95:		Line 86:
	</source>		</source>

	Note: The path to the GRASS-x.x.app and the version number in libintl.X.dylib must reflect your own configuration.		'''Note''': The path to the GRASS-x.x.app and the version number in libintl.X.dylib must reflect your own configuration.

	==== MS Windows ====		==== MS Windows ====

Neteler: Major update; GRASS GIS 6 parts dropped

2022-10-22T14:13:58Z

Major update; GRASS GIS 6 parts dropped

Show changes

⚠️Hellik: /* GRASS 7 Usage */

2016-12-25T22:13:09Z

GRASS 7 Usage

← Older revision		Revision as of 22:13, 25 December 2016
Line 188:		Line 188:

	* Start winGRASS 7, bring the winGRASS-windows console in front and type ''R'' for opening a R-session (command line mode) inside a GRASS-session.		* Start winGRASS 7, bring the winGRASS-windows console in front and type ''R'' for opening a R-session (command line mode) inside a GRASS-session.
	* Start ~~WinGRASS~~ 7, bring the winGRASS-windows console in front and type ''RGui'' for opening a R-session (GUI mode) inside a GRASS-session.		* Start winGRASS 7, bring the winGRASS-windows console in front and type ''RGui'' for opening a R-session (GUI mode) inside a GRASS-session.

	[[Category:Installation]]		[[Category:Installation]]

⚠️Hellik: /* GRASS 7 Usage */

2016-12-25T22:12:44Z

GRASS 7 Usage

← Older revision		Revision as of 22:12, 25 December 2016
Line 187:		Line 187:
	In winGRASS 7 ([http://grass.osgeo.org/download/software.php#g70x standalone installer] and [https://trac.osgeo.org/osgeo4w/ OSGeo4W]) the [http://code.google.com/p/batchfiles/ Windows batchfiles for use with R] are now integrated for a smooth R-winGRASS-integration. The installation path of R and RStudio are dynamically loaded into PATH.		In winGRASS 7 ([http://grass.osgeo.org/download/software.php#g70x standalone installer] and [https://trac.osgeo.org/osgeo4w/ OSGeo4W]) the [http://code.google.com/p/batchfiles/ Windows batchfiles for use with R] are now integrated for a smooth R-winGRASS-integration. The installation path of R and RStudio are dynamically loaded into PATH.

	Start winGRASS 7, bring the winGRASS-windows console in front and type ''R'' for opening a R-session (command line mode) inside a GRASS-session.		* Start winGRASS 7, bring the winGRASS-windows console in front and type ''R'' for opening a R-session (command line mode) inside a GRASS-session.
	Start WinGRASS 7, bring the winGRASS-windows console in front and type ''RGui'' for opening a R-session (GUI mode) inside a GRASS-session.		* Start WinGRASS 7, bring the winGRASS-windows console in front and type ''RGui'' for opening a R-session (GUI mode) inside a GRASS-session.

	[[Category:Installation]]		[[Category:Installation]]