Marine Science

this page is a work in progress

Tools for marine scientists

Bathymetry processing

• Basic DEM creation: v.in.ascii + v.surf.rst
• r.in.xyz for processing multibeam sonar swaths
• r.surf.nnbathy add-on script for creating bathymetic DEMs from input x,y,z data

• Multibeam sonar swath transect planning script

Bathymetric data

Smith and Sandwell 1-minute global elevation, v9.1, August 21, 2007

http://topex.ucsd.edu/marine_topo/mar_topo.html (712mb)

global_topo_1min/README_V9.1.txt file:

Version 9.1 has a very different FORMAT than V8.2
The main differences are that the grid spacing in 
longitude is now 1 minute rather than 2 minutes.
In addition, the latitude range is increased to 
+/- 80.738.  Like the old versions, the elevation(+)
and depth(-) are stored as 2-byte integers to the nearest meter.
An odd depth of say -2001m signifies that this pixel was constrained
by a real depth sounding while an even depth of say -2000m is
a predicted depth.

Here are the parameters for the old and vew versions:
param    V8.2     V9.2
___________________________
nlon     10800    21600
nlat     12672    17280
rlt0   -72.006  -80.738
rltf    72.006   80.738
___________________________

The binary format of the integers is bigendian so the bytes need to be 
swapped if you are running on an Intel processor.
Here is a typical command for swapping bytes:
dd if=topo_9.1.img of=topo_9.1.img.swab bs=21600 conv=swab.

To load it into GRASS lat/lon location (spherical):

 # (untested)
 # offset n,s,e,w by 1/2 a grid cell?
 r.in.bin -b input=topo_9.1b.img output=topo_9.1b \
      bytes=2 rows=17280 cols=21600 \
      n=80.738 s=-80.738 e=180 w=-180

Sidescan sonar processing

• i.gdalwarp script for georectifying and mosaicking scanned paper rolls into a GeoTIFF

• v.swathwidth script for planning swath bathymetry surveys

Wave exposure

• Using GRASS to prepare and process data for the SWAN Wave Model
  • preparing input DEM
  • r.in.mat and r.out.mat

Circulation models

• Preparing input grids
  • r.in.mat and r.out.mat

Tutorials

Remote Sensing

• Importing MODIS Aqua SST and Chlorophyll-a data

Mapping and Cartography

• Using GMT with GRASS
• Using vector electronic navigation charts with GRASS
• Using rasterized navigation charts with GRASS