R.basin: Difference between revisions

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The module {{AddonCmd|r.basin}} has been designed to perform the delineation and the morphometric characterization of a given basin, on the basis of an elevation raster map and the coordinates of the outlet.  
The module {{AddonCmd|r.basin}} has been designed to perform the delineation and the morphometric characterization of a given basin, on the basis of an elevation raster map and the coordinates of the outlet.  
Here a tutorial based on NC sample dataset is presented.
Please note that it is designed to work only in projected coordinates.
Here a tutorial based on NC sample dataset is presented. The tutorial refers to GRASS 6. In GRASS 7, a few improvements have been introduced to r.basin. See the section below for details.


== Preparation ==
== Preparation ==
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</pre>
</pre>


For the basin's delineation, a pair of coordinates is required. Usually coordinates belonging to the natural river network don't exactly match with the calculated stream network. What we should do is calculating the stream network first, and then find the coordinates on the calculated stream network closest to the coordinates belonging to the natural stream network.
For the basin's delineation, a pair of coordinates is required. Usually coordinates belonging to the natural river network don't exactly match with the calculated stream network. What we should do is to calculate the stream network first, and then to find the coordinates on the calculated stream network closest to the coordinates belonging to the natural stream network.


<pre>
<pre>
# Calculate drainage map
# Calculate flow accumulation map (MFD)
r.watershed -a elevation=elevation@PERMANENT accumulation=accum
r.watershed -af elevation=elevation@PERMANENT accumulation=accum


# Extract the stream network
# Extract the stream network
r.stream.extract elevation=elevation@PERMANENT accumulation=accum@testing threshold=20 stream_rast=stream_network
r.stream.extract elevation=elevation@PERMANENT accumulation=accum threshold=20 stream_rast=stream_network stream_vect=streams
</pre>
</pre>


Line 41: Line 42:
</pre>
</pre>


Now that we have the calculated stream network, we should choose a pair of coordinates for the outlet belonging to it. Let's choose:
Now that we have the calculated stream network, we should choose a pair of coordinates for the outlet belonging to it. Let's choose for example:


<pre>
<pre>
Line 52: Line 53:
g.remove rast=stream_network
g.remove rast=stream_network
</pre>
</pre>
== Preparation for multiple basins' analysis ==
If there are a lot of basins to be analysed, the coordinate pairs of the intersections between the calculated stream network and basins (outlet points) can be found by:
<pre>
# Convert basins polygon vector boundaries to lines
v.type input=basinspoly output=basinsline type=boundary,line
# Patch basins lines with stream network
v.patch input=basinsline,streams output=basins_streams
# Find cross points at intersections
v.clean input=basins_streams output=basins_streams_clean error=crosspoints_err tool=break
# Add categories to cross points vector
v.category input=crosspoints_err output=crosspoints
# Add table to cross points vector with columns for category, x and y coordinates
v.db.addtable map=crosspoints columns="cat integer,xcoor double precision, ycoor double precision"
# Upload category to cross points attribute table
v.to.db map=crosspoints option=cat columns=cat
# Upload x and y coordinates to cross points attribute table
v.to.db map=crosspoints option=coor columns=xcoor,ycoor
</pre>
At this point we can create a text file called ''crosspoints'' with the coordinates in this form:
<pre>
xcoor1 ycoor1
xcoor2 ycoor2
xcoor3 ycoor3
...
</pre>
Now we can parse this coordinates file in order to create a new file called ''commands'' in which we'll have the r.basin commands for each sub-watershed, ready to be run in a GRASS session. Let's create a script in python for parsing:
<pre>
#!/usr/bin/env python
# Open the ''crosspoints'' text file to read the coordinates
fin = open("crosspoints","r")
# Create the ''commands'' text file
fout = open("commands","w")
# Read the ''crosspoints'' lines
linesout = (line.rstrip().split() for line in fin)
# Build the r.basin command
# Put your threshold parameter instead of threshold=10000 and the name of your DEM instead of map=elevation
cmd = 'r.basin map=elevation prefix=bas%s easting=%s northing=%s threshold=10000\n'
# Write the file ''commands''
fout.writelines(cmd % (n, easting, northing) for n,(easting,northing) in enumerate(linesout))
</pre>
This is a Python script, it is supposed to run externally from GRASS GIS. Save this script as ''parsing.py'' in a separate folder on your Desktop, and put the file ''crosspoints'' in such folder. To run it, open a terminal and type:
<pre>
cd yourfolder
python parsing.py
</pre>
Now in the same folder you will find the file ''commands'', in which we have the r.basin commands to run in GRASS.


== Usage ==
== Usage ==
Line 58: Line 126:


<pre>
<pre>
r.basin map=elevation@PERMANENT prefix=out easting=636654.791181 northing=218824.126649 threshold=20
r.basin map=elevation@PERMANENT prefix=out coordinates=636654.791181,218824.126649 threshold=20 dir=tmp/my_basin
</pre>
</pre>


Prefix parameter is a string given by the user in order to distinguish all the maps produced by every run of the program, i.e. every set of outlet's coordinates. Prefix must start with a letter.
Prefix parameter is a string given by the user in order to distinguish all the maps produced by every run of the program, i.e. every set of outlet's coordinates. Prefix must start with a letter.
Threshold is the same parameter given in r.watershed and r.stream.extract. Physically, it means the number of cells that determine "where the river begins". (This is an open issue for the hydrological science and a wide literature has been produced on the topic).
 
Threshold is the same parameter given in r.watershed and r.stream.extract. Physically, it means the number of cells that determine "where the river begins". (This is an open issue for the hydrological science and a wide literature has been produced on the topic). Threshold value is usually determined by trials and errors. r.basin has a flag -a, which uses an authomatic value of threshold, corresponding to 1km^2. Such value comes from literature and is usually suitable for Italian territory, but could be definitely wrong for other territories.
In order to determine the threshold, see also {{AddonCmd|r.threshold}} and {{AddonCmd|r.stream.preview}}.


The output of r.basin consists of:  
The output of r.basin consists of:  


* Several morphometric parameters, which are printed in terminal and also stored in a csv file called out_elevation_parameters, in the working directory;
* Several morphometric parameters, which are printed in terminal and also stored in a csv file called out_elevation_parameters.csv, in the working directory;
* Maps;
* Maps;
* Plots.
* Plots.
Line 74: Line 144:
The main parameters are:
The main parameters are:


* The coordinates of the vertices of the rectangle containing the basin.
* The coordinates of the vertices of the '''rectangle containing the basin'''.
* The center of gravity of the basin: the coordinates of the pixel nearest to the center of gravity of the geometric figure resulting from the projection of the basin on the horizontal plane.
* The '''center of gravity''' of the basin: the coordinates of the pixel nearest to the center of gravity of the geometric figure resulting from the projection of the basin on the horizontal plane.
* The area of the basin: is the area of a single cell multiplied by the number of cells belonging to the basin.
* The '''area''' of the basin: is the area of a single cell multiplied by the number of cells belonging to the basin.
* The perimeter: is the length of the contour of the figure resulting by the projection of the basin on the horizontal plane.
* The '''perimeter''': is the length of the contour of the figure resulting by the projection of the basin on the horizontal plane.
* Characteristic values of elevation: the highest and the lowest altitude, the difference between them and the mean elevation calculated as the sum of the values of the cells divided by the number of the cells.
[As a side note, a paper namely [http://en.wikipedia.org/wiki/How_Long_Is_the_Coast_of_Britain%3F_Statistical_Self-Similarity_and_Fractional_Dimension "How Long Is the Coast of Britain? Statistical Self-Similarity and Fractional Dimension"] points out that perimeter is affected by a fractal problem and the number is mostly meaningless taken by itself. Hence, perimeter should never be mixed with anything from another dataset or even the same data set at a different cell resolution; it is only good as a percentage comparison to its neighbors in the same dataset].
* The mean slope, calculated averaging the slope map.
* '''Characteristic values of elevation''': the highest and the lowest altitude, the difference between them and the mean elevation calculated as the sum of the values of the cells divided by the number of the cells.
* The length of the directing vector: the length of the vector linking the outlet to the center of gravity of the basin.
* The '''mean slope''', calculated averaging the slope map.
* The prevalent orientation:  in Grass GIS the aspect categories represent the number degrees of east and they increase counterclockwise: (90deg is North, 180 is West, 270 is South 360 is East). The aspect value 0 is used to indicate undefined aspect in flat areas with slope=0. We instead calculate the orientation as the number of degree from north, increasing counterclockwise.
* The '''length of the directing vector''': the length of the vector linking the outlet to basin's barycenter.
* The length of main channel: is the length of the longest succession of segments that connect a source to the outlet of the basin.
* The '''prevalent orientation''':  is the orientation of the directing vector.
The mean slope of main channel: it is calculated as follows:
* The '''length of main channel''': is the length of the longest succession of segments that connect a source to the outlet of the basin.
* The '''mean slope of main channel''': it is calculated as follows:


<center>
<center>
Line 90: Line 161:


where N is the topological diameter, i.e. the number of links in which the main channel can be divided on the basis of the junctions.
where N is the topological diameter, i.e. the number of links in which the main channel can be divided on the basis of the junctions.
* The circularity ratio: is the ratio between the area of the basin and the area of the circle having the same perimeter of the basin.
* The '''circularity ratio''': is the ratio between the area of the basin and the area of the circle having the same perimeter of the basin.
* The elongation ratio: is the ratio between the diameter of the circle having the same area of the basin and the length of the main channel.
* The '''elongation ratio''': is the ratio between the diameter of the circle having the same area of the basin and the length of the main channel.
* The compactness coefficient: is the ratio between the perimeter of the basin and the diameter of the circle having the same area of the basin.
* The '''compactness coefficient''': is the ratio between the perimeter of the basin and the diameter of the circle having the same area of the basin.
* The shape factor: is the ratio between the area of the basin and the square of the length of the main channel.
* The '''shape factor''': is the ratio between the area of the basin and the square of the length of the main channel.
* The concentration time (Giandotti, 1934):
* The '''concentration time''' (Giandotti, 1934):


<center>
<center>
Line 101: Line 172:


Where A is the area, L the length of the main channel and H the difference between the highest and the lowest elevation of the basin.
Where A is the area, L the length of the main channel and H the difference between the highest and the lowest elevation of the basin.
* The mean hillslope length: is the mean of the distances calculated along the flow direction of each point non belonging to the river network from the point in which flows into the network.
* The '''mean hillslope length''': is the mean of the distances calculated along the flow direction of each point non belonging to the river network from the point in which flows into the network.
* The magnitudo: is the number of the branches of order 1 following the Strahler hierarchy.
* The '''magnitudo''': is the number of the branches of order 1 following the Strahler hierarchy.
* The max order: is the order of the basin, following the Strahler hierarchy.
* The '''max order''': is the order of the basin, following the Strahler hierarchy.
* The number of streams: is the number of the branches of the river network.
* The '''number of streams''': is the number of the branches of the river network.
* The total stream length: is the sum of the length of every branches.
* The '''total stream length''': is the sum of the length of every branches.
* The first order stream frequency: is the ratio between the magnitudo and the area of the basin.
* The '''first order stream frequency''': is the ratio between the magnitudo and the area of the basin.
* The drainage density: is the ratio between the total length of the river network and the area.
* The '''drainage density''': is the ratio between the total length of the river network and the area.
* The Horton ratios (Horton, 1945; Strahler, 1957).
* The '''Horton ratios''' (Horton, 1945; Strahler, 1957).


<pre>
<pre>
Line 116: Line 187:
Easting Centroid of basin : 635195.00
Easting Centroid of basin : 635195.00
Northing Centroid of Basin : 220715.00
Northing Centroid of Basin : 220715.00
Rectangle containing basin N-W : 632870 , 222890
Rectangle containing basin N-W : 632880 , 222890
Rectangle containing basin S-E : 637000 , 218720
Rectangle containing basin S-E : 637010 , 218720
Area of basin [km^2] : 7.8559625
Area of basin [km^2] : 7.8592625
Perimeter of basin [km] : 16.8287990515
Perimeter of basin [km] : 17.7583322395
Max Elevation [m s.l.m.] : 151.7396
Max Elevation [m s.l.m.] : 151.7396
Min Elevation [m s.l.m.]: 94.82206
Min Elevation [m s.l.m.]: 94.82206
Elevation Difference [m]: 56.91754
Elevation Difference [m]: 56.91754
Mean Elevation [m s.l.m.]: 127.6772
Mean Elevation [m s.l.m.]: 127.7042
Mean Slope : 2.93
Mean Slope : 3.50
Length of Directing Vector [km] : 2.38880562659
Length of Directing Vector [km] : 2.38880562659
Prevalent Orientation [degree from north, counterclockwise] :
Prevalent Orientation [degree from north, counterclockwise] :
0.913351005341
0.913351005341
Compactness Coefficient : 5.32106255399
Compactness Coefficient : 5.61379074702
Circularity Ratio : 0.348580442132
Circularity Ratio : 0.313175157621
Topological Diameter : 127.0
Topological Diameter : 105.0
Elongation Ratio : 0.470961456397
Elongation Ratio : 0.469323448397
Shape Factor : 1.16984953656
Shape Factor : 1.16602561484
Concentration Time (Giandotti, 1934) [hr] : 3.52654267443
Concentration Time (Giandotti, 1934) [hr] : 3.53310944404
Length of Mainchannel [km] : 6.715361467
Length of Mainchannel [km] : 6.74021428
Mean slope of mainchannel [percent] : 0.957339
Mean slope of mainchannel [percent] : 1.202028
Mean hillslope length [m] : 8145.381
Mean hillslope length [m] : 5932.153
Magnitudo : 621.0
Magnitudo : 415.0
Max order (Strahler) : 5
Max order (Strahler) : 5
Number of streams : 884
Number of streams : 612
Total Stream Length [km] : 96.3436
Total Stream Length [km] : 80.8272
First order stream frequency : 79.0482388377
First order stream frequency : 52.8039367562
Drainage Density [km/km^2] : 12.2637550778
Drainage Density [km/km^2] : 10.2843237518
Bifurcation Ratio (Horton) : 5.7374
Bifurcation Ratio (Horton) : 5.0940
Length Ratio (Horton) : 2.6902
Length Ratio (Horton) : 2.1837
Area ratio (Horton) : 5.6815
Area ratio (Horton) : 5.6571
Slope ratio (Horton): 1.5533
Slope ratio (Horton): 1.4418
</pre>
</pre>


The hypsographic curve provides the distribution of the areas at different altitudes. Each point on the hypsographic curve has on the y-axis the altitude and on the x-axis the percentage of basin surface placed above that altitude. The ipsometric curve has the same shape but is dimensionless.
The '''hypsographic curve''' provides the distribution of the areas at different altitudes. Each point on the hypsographic curve has on the y-axis the altitude and on the x-axis the percentage of basin surface placed above that altitude. The '''hypsometric curve''' has the same shape but is dimensionless.
Quantiles of the ipsometric curve are displayed:
Quantiles of the hypsometric curve are displayed:


<pre>
<pre>
Tot. cells 78560.0
Tot. cells 78593.0
===========================
===========================
Ipsometric | quantiles
Hypsometric | quantiles
===========================
===========================
145 | 0.025
145 | 0.025
Line 163: Line 234:
129 | 0.5
129 | 0.5
119 | 0.75
119 | 0.75
121 | 0.7
110 | 0.9
110 | 0.9
100 | 0.975
100 | 0.975
</pre>
</pre>


The width function W(x) gives the area of the cells in the basin at a certain flow distance x from the outlet (distance-area function). Note that the distance is not intended in the euclidean sense, but it's calculated considering the hydrological path of the water.
The '''width function W(x)''' gives the area of the cells in the basin at a certain flow distance x from the outlet (distance-area function). Note that the distance is not intended in the euclidean sense, but it's calculated considering the hydrological path of the water.


<pre>
<pre>
Tot. cells 78560.0
Tot. cells 78593.0
Tot. area 7856000.0
Tot. area 7859300.0
Max distance 6809.546521
Max distance 6769.341392
===========================
===========================
Whidth Function | quantiles
Width Function | quantiles
===========================
===========================
784 | 0.05
801 | 0.05
1477 | 0.15
1507 | 0.15
2137 | 0.3
2166 | 0.3
2543 | 0.4
2572 | 0.4
2933 | 0.5
2958 | 0.5
3606 | 0.6
3629 | 0.6
4169 | 0.7
4184 | 0.7
5144 | 0.85
5132 | 0.85
6105 | 0.95
6089 | 0.95
</pre>
</pre>


Line 194: Line 264:
Max order | Tot.N.str. | Tot.str.len. | Tot.area. | Dr.dens. | Str.freq.  
Max order | Tot.N.str. | Tot.str.len. | Tot.area. | Dr.dens. | Str.freq.  
   (num)  |    (num)  |    (km)    |  (km2)  | (km/km2) | (num/km2)  
   (num)  |    (num)  |    (km)    |  (km2)  | (km/km2) | (num/km2)  
         5 |        884 |      96.3436 |    7.8339 |  12.2983 | 112.8429
         5 |        612 |      80.8272 |    7.8593 |  10.2843 | 77.8695
 
Stream ratios based on regression coefficient:
Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt.
  5.0940 |  2.1837 |  5.6571 |  1.4418 |  1.5420


Stream ratios with standard deviations:
Averaged stream ratios with standard deviations:
  Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt.  
  Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt.  
   5.7374 |  2.6902 |  5.6815 |  1.5533 |  1.7962
   5.5417 |  2.6271 |  5.1916 |  1.4625 |  1.6693
   3.1961 |  1.9514 |  5.2294 |  0.1250 |  0.7482
   3.5678 |  1.9342 |  4.3638 |  0.1448 |  0.6477


Order | Avg.len |  Avg.ar  |  Avg.sl |  Avg.grad. | Avg.el.dif
Order | Avg.len |  Avg.ar  |  Avg.sl |  Avg.grad. | Avg.el.dif
  num  |  (km)  |  (km2)  |  (m/m)  |    (m/m)  |    (m)   
  num  |  (km)  |  (km2)  |  (m/m)  |    (m/m)  |    (m)   
     1 |  0.0750 |  0.0069 |  0.0523 |    0.0384 |  3.1062
     1 |  0.0880 |  0.0100 |  0.0428 |    0.0331 |  3.1995
     2 |  0.1428 |  0.0311 |  0.0342 |    0.0277 |  4.1701
     2 |  0.2025 |  0.0501 |  0.0303 |    0.0250 |  5.3206
     3 |  0.4834 |  0.1732 |  0.0243 |    0.0205 |  9.0641
     3 |  0.5337 |  0.2538 |  0.0212 |    0.0177 |  8.5684
     4 |  2.4205 |  2.1885 |  0.0155 |    0.0134 | 24.1708
     4 |  2.7421 |  2.7104 |  0.0159 |    0.0136 | 25.1265
     5 |  1.1247 |  7.8339 |  0.0091 |    0.0046 |  5.1594
     5 |  1.1871 |  7.8593 |  0.0095 |    0.0051 |  6.1054


Order | Std.len |  Std.ar  |  Std.sl |  Std.grad. | Std.el.dif
Order | Std.len |  Std.ar  |  Std.sl |  Std.grad. | Std.el.dif
  num  |  (km)  |  (km2)  |  (m/m)  |    (m/m)  |    (m)   
  num  |  (km)  |  (km2)  |  (m/m)  |    (m/m)  |    (m)   
     1 |  0.0600 |  0.0052 |  0.0398 |    0.0287 |  3.2301
     1 |  0.0771 |  0.0082 |  0.0362 |    0.0275 |  3.5790
     2 |  0.1244 |  0.0230 |  0.0250 |    0.0196 |  4.4835
     2 |  0.1841 |  0.0398 |  0.0185 |    0.0145 |  5.6062
     3 |  0.4554 |  0.1353 |  0.0132 |    0.0122 |  7.1065
     3 |  0.6182 |  0.2493 |  0.0131 |    0.0120 |  8.5329
     4 |  2.2874 |  2.3843 |  0.0046 |    0.0061 | 12.9175
     4 |  2.8546 |  3.1286 |  0.0062 |    0.0085 | 15.5228
     5 |  0.0000 |  0.0000 |  0.0000 |    0.0000 |  0.0000
     5 |  0.0000 |  0.0000 |  0.0000 |    0.0000 |  0.0000


Order | N.streams | Tot.len (km) | Tot.area (km2)
Order | N.streams | Tot.len (km) | Tot.area (km2)
     1 |      712 |      53.4067 |  4.8998
     1 |      490 |      43.1013 |  4.8895
     2 |       137 |      19.5657 |  4.2562
     2 |       98 |      19.8470 |  4.9085
     3 |        31 |      14.9849 |  5.3684
     3 |        21 |      11.2077 |  5.3290
     4 |        3 |      7.2616 |  6.5655
     4 |        2 |      5.4841 |  5.4207
     5 |        1 |      1.1247 |  7.8339
     5 |        1 |      1.1871 |  7.8593


Order | Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt. | d.dens. | str.freq.
Order | Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt. | d.dens. | str.freq.
     1 |  5.1971 |  1.9040 |  0.0000 |  1.5311 |  1.3892 | 10.8998 | 145.3120
     1 |  5.0000 |  2.3024 |  0.0000 |  1.4154 |  1.3236 | 8.8151 | 100.2147
     2 |  4.4194 |  3.3847 |  4.5144 |  1.4046 |  1.3472 |  4.5970 | 32.1883
     2 |  4.6667 |  2.6353 |  5.0194 |  1.4279 |  1.4086 |  4.0434 | 19.9654
     3 | 10.3333 |  5.0075 |  5.5742 |  1.5691 |  1.5365 |  2.7913 |  5.7745
     3 | 10.5000 |  5.1378 |  5.0664 |  1.3358 |  1.3065 |  2.1031 |  3.9407
     4 |  3.0000 |  0.4646 |  12.6376 |  1.7083 |  2.9120 |  1.1060 |  0.4569
     4 |  2.0000 |  0.4329 |  10.6807 |  1.6710 |  2.6385 |  1.0117 |  0.3690
     5 |  0.0000 |  0.0000 |  3.5796 |  0.0000 |  0.0000 |  0.1436 |  0.1277
     5 |  0.0000 |  0.0000 |  2.8997 |  0.0000 |  0.0000 |  0.1510 |  0.1272
 
</pre>
</pre>


Line 250: Line 325:


<center>
<center>
<gallery perrow=3 widths=200>
<gallery perrow=5 widths=200>
 
 


File:Out_elevation_slope.png|Slope
File:Out_elevation_aspect.png|Aspect
File:Out_elevation_drainage.png|Flow direction
File:Out_elevation_accumulation.png|Flow accumulation
File:Out_elevation_accumulation.png|Flow accumulation
File:Out_elevation_aspect.png|Aspect
File:Out_elevation_dist2out.png|Distance to outlet (width function)
File:Out_elevation_dist2out.png|Distance to outlet (width function)
File:Out_elevation_drainage.png|Flow direction
File:Out_elevation_hack.png|Stream network ordered according to Hack
File:Out_elevation_hillslope_distance.png|Length of hillslopes
File:Out_elevation_hillslope_distance.png|Length of hillslopes
File:Out_elevation_strahler.png|Stream network ordered according to Strahler
File:Out_elevation_horton.png|Stream network ordered according to Horton
File:Out_elevation_horton.png|Stream network ordered according to Horton
File:Out_elevation_shreve.png|Stream network ordered according to Shreve
File:Out_elevation_shreve.png|Stream network ordered according to Shreve
File:Out_elevation_slope.png|Slope
File:Out_elevation_hack.png|Stream network ordered according to Hack
File:Out_elevation_strahler.png|Stream network ordered according to Strahler
 


</gallery>
</gallery>
Line 273: Line 351:
out_elevation_basin      out_elevation_network
out_elevation_basin      out_elevation_network
out_elevation_mainchannel out_elevation_outlet
out_elevation_mainchannel out_elevation_outlet
out_elevation_outlet_snap
</pre>
</pre>


Line 286: Line 365:
</center>
</center>


== Plots ==
The vector map out_elevation_outlet_snap has a table associated, that stores all the parameters calculated. The outlet_snap is the outlet moved to the nearest river network, and can slightly differ from the outlet given by the coordinates pair, in case this latter doesn't fall on the (calculated) river network.


Plots are stored in the working directory:
== Graphics ==
 
Graphics are stored in the working directory:


* out_elevation_ipsographic.png
* out_elevation_ipsographic.png
Line 303: Line 384:
</gallery>
</gallery>
</center>
</center>
== Known issues ==
# r.basin hasn't been designed for working in lat/long coordinates. This means that if you are working in lat/long coordinates, you need to reproject your map first in order to apply the tool. <br />
# r.basin is designed to work in meters unit. The values that you get using feet are nonsense. <br />
# r.basin does not handle overwrite. You need to delete the output products already created (maps, text file, figures) by hand before running it again.
== r.basin for GRASS 6.4 ==
r.basin was initially designed to run in grass 6.4, but in G7, r.basin has been improved and bugs were fixed, so it is strongly advised to upgrade to G7. The usage in G6 is:
<pre>
r.basin [-ac] map=name prefix=prefix easting=east northing=north [threshold=threshold]
</pre>


== See also ==
== See also ==
Line 310: Line 406:
== References ==
== References ==


* Rodriguez-Iturbe I., Rinaldo A.; Fractal River Basins, Chance and Self-Organization. Cambridge Press (2001)
* Di Leo Margherita, Di Stefano Massimo, An Open-Source Approach for Catchment's Physiographic Characterization, In: Proceedings of AGU Fall Meeting 2013, S.Francisco, CA, USA.
* Di Leo M., Di Stefano M., Claps P., Sole A. Caratterizzazione morfometrica del bacino idrografico in GRASS GIS (Morphometric characterization of the catchment in GRASS GIS environment), Geomatics Workbooks n.9, 2010. ([http://geomatica.como.polimi.it/workbooks/n9/GW9-FOSS4Git_2010.pdf PDF]).
* Di Leo Margherita, Working report: Extraction of morphometric parameters from a digital elevation model - Panama. North Carolina State University, 2010 ([http://dl.dropbox.com/u/1599323/Report_Panama.pdf PDF])
* Di Leo M., Di Stefano M., Claps P., Sole A., Caratterizzazione morfometrica del bacino idrografico in GRASS GIS (Morphometric characterization of the catchment in GRASS GIS environment), Geomatics Workbooks n.9, 2010. ([http://geomatica.como.polimi.it/workbooks/n9/GW9-FOSS4Git_2010.pdf PDF]).
* Rodriguez-Iturbe I., Rinaldo A., Fractal River Basins, Chance and Self-Organization. Cambridge Press, 2001.


[[Category: Documentation]]
[[Category: Documentation]]
[[Category: Tutorial]]
[[Category: Hydrology]]
[[Category: Hydrology]]

Latest revision as of 10:02, 10 August 2017

Introduction

The module r.basin has been designed to perform the delineation and the morphometric characterization of a given basin, on the basis of an elevation raster map and the coordinates of the outlet. Please note that it is designed to work only in projected coordinates. Here a tutorial based on NC sample dataset is presented. The tutorial refers to GRASS 6. In GRASS 7, a few improvements have been introduced to r.basin. See the section below for details.

Preparation

As a first step, we set the computational region to match the elevation raster map: 

g.region rast=elevation@PERMANENT -ap
projection: 99 (Lambert Conformal Conic)
zone:       0
datum:      nad83
ellipsoid:  a=6378137 es=0.006694380022900787
north:      228500
south:      215000
west:       630000
east:       645000
nsres:      10
ewres:      10
rows:       1350
cols:       1500
cells:      2025000

For the basin's delineation, a pair of coordinates is required. Usually coordinates belonging to the natural river network don't exactly match with the calculated stream network. What we should do is to calculate the stream network first, and then to find the coordinates on the calculated stream network closest to the coordinates belonging to the natural stream network. 

# Calculate flow accumulation map (MFD)
r.watershed -af elevation=elevation@PERMANENT accumulation=accum

# Extract the stream network
r.stream.extract elevation=elevation@PERMANENT accumulation=accum threshold=20 stream_rast=stream_network stream_vect=streams

We no longer need the accumulation map: 

g.remove rast=accum

Now that we have the calculated stream network, we should choose a pair of coordinates for the outlet belonging to it. Let's choose for example: 

easting=636654.791181 northing=218824.126649

We no longer need the stream network map: 

g.remove rast=stream_network

Preparation for multiple basins' analysis

If there are a lot of basins to be analysed, the coordinate pairs of the intersections between the calculated stream network and basins (outlet points) can be found by: 

# Convert basins polygon vector boundaries to lines
v.type input=basinspoly output=basinsline type=boundary,line

# Patch basins lines with stream network
v.patch input=basinsline,streams output=basins_streams

# Find cross points at intersections
v.clean input=basins_streams output=basins_streams_clean error=crosspoints_err tool=break

# Add categories to cross points vector
v.category input=crosspoints_err output=crosspoints

# Add table to cross points vector with columns for category, x and y coordinates
v.db.addtable map=crosspoints columns="cat integer,xcoor double precision, ycoor double precision"

# Upload category to cross points attribute table
v.to.db map=crosspoints option=cat columns=cat

# Upload x and y coordinates to cross points attribute table
v.to.db map=crosspoints option=coor columns=xcoor,ycoor

At this point we can create a text file called crosspoints with the coordinates in this form: 

xcoor1 ycoor1
xcoor2 ycoor2
xcoor3 ycoor3
...

Now we can parse this coordinates file in order to create a new file called commands in which we'll have the r.basin commands for each sub-watershed, ready to be run in a GRASS session. Let's create a script in python for parsing: 

#!/usr/bin/env python

# Open the ''crosspoints'' text file to read the coordinates
fin = open("crosspoints","r")

# Create the ''commands'' text file
fout = open("commands","w")

# Read the ''crosspoints'' lines
linesout = (line.rstrip().split() for line in fin)

# Build the r.basin command 
# Put your threshold parameter instead of threshold=10000 and the name of your DEM instead of map=elevation
cmd = 'r.basin map=elevation prefix=bas%s easting=%s northing=%s threshold=10000\n'

# Write the file ''commands''
fout.writelines(cmd % (n, easting, northing) for n,(easting,northing) in enumerate(linesout))

This is a Python script, it is supposed to run externally from GRASS GIS. Save this script as parsing.py in a separate folder on your Desktop, and put the file crosspoints in such folder. To run it, open a terminal and type: 

cd yourfolder
python parsing.py

Now in the same folder you will find the file commands, in which we have the r.basin commands to run in GRASS.

Usage

We can run r.basin: 

r.basin map=elevation@PERMANENT prefix=out coordinates=636654.791181,218824.126649 threshold=20 dir=tmp/my_basin

Prefix parameter is a string given by the user in order to distinguish all the maps produced by every run of the program, i.e. every set of outlet's coordinates. Prefix must start with a letter.

Threshold is the same parameter given in r.watershed and r.stream.extract. Physically, it means the number of cells that determine "where the river begins". (This is an open issue for the hydrological science and a wide literature has been produced on the topic). Threshold value is usually determined by trials and errors. r.basin has a flag -a, which uses an authomatic value of threshold, corresponding to 1km^2. Such value comes from literature and is usually suitable for Italian territory, but could be definitely wrong for other territories. In order to determine the threshold, see also r.threshold and r.stream.preview.

The output of r.basin consists of:

  • Several morphometric parameters, which are printed in terminal and also stored in a csv file called out_elevation_parameters.csv, in the working directory;
  • Maps;
  • Plots.

Morphometric parameters

The main parameters are:

  • The coordinates of the vertices of the rectangle containing the basin.
  • The center of gravity of the basin: the coordinates of the pixel nearest to the center of gravity of the geometric figure resulting from the projection of the basin on the horizontal plane.
  • The area of the basin: is the area of a single cell multiplied by the number of cells belonging to the basin.
  • The perimeter: is the length of the contour of the figure resulting by the projection of the basin on the horizontal plane.

[As a side note, a paper namely "How Long Is the Coast of Britain? Statistical Self-Similarity and Fractional Dimension" points out that perimeter is affected by a fractal problem and the number is mostly meaningless taken by itself. Hence, perimeter should never be mixed with anything from another dataset or even the same data set at a different cell resolution; it is only good as a percentage comparison to its neighbors in the same dataset].

  • Characteristic values of elevation: the highest and the lowest altitude, the difference between them and the mean elevation calculated as the sum of the values of the cells divided by the number of the cells.
  • The mean slope, calculated averaging the slope map.
  • The length of the directing vector: the length of the vector linking the outlet to basin's barycenter.
  • The prevalent orientation: is the orientation of the directing vector.
  • The length of main channel: is the length of the longest succession of segments that connect a source to the outlet of the basin.
  • The mean slope of main channel: it is calculated as follows:

where N is the topological diameter, i.e. the number of links in which the main channel can be divided on the basis of the junctions.

  • The circularity ratio: is the ratio between the area of the basin and the area of the circle having the same perimeter of the basin.
  • The elongation ratio: is the ratio between the diameter of the circle having the same area of the basin and the length of the main channel.
  • The compactness coefficient: is the ratio between the perimeter of the basin and the diameter of the circle having the same area of the basin.
  • The shape factor: is the ratio between the area of the basin and the square of the length of the main channel.
  • The concentration time (Giandotti, 1934):

Where A is the area, L the length of the main channel and H the difference between the highest and the lowest elevation of the basin.

  • The mean hillslope length: is the mean of the distances calculated along the flow direction of each point non belonging to the river network from the point in which flows into the network.
  • The magnitudo: is the number of the branches of order 1 following the Strahler hierarchy.
  • The max order: is the order of the basin, following the Strahler hierarchy.
  • The number of streams: is the number of the branches of the river network.
  • The total stream length: is the sum of the length of every branches.
  • The first order stream frequency: is the ratio between the magnitudo and the area of the basin.
  • The drainage density: is the ratio between the total length of the river network and the area.
  • The Horton ratios (Horton, 1945; Strahler, 1957).
##################################
Morphometric parameters of basin :
##################################
Easting Centroid of basin : 635195.00
Northing Centroid of Basin : 220715.00
Rectangle containing basin N-W : 632880 , 222890
Rectangle containing basin S-E : 637010 , 218720
Area of basin [km^2] : 7.8592625
Perimeter of basin [km] : 17.7583322395
Max Elevation [m s.l.m.] : 151.7396
Min Elevation [m s.l.m.]: 94.82206
Elevation Difference [m]: 56.91754
Mean Elevation [m s.l.m.]: 127.7042
Mean Slope : 3.50
Length of Directing Vector [km] : 2.38880562659
Prevalent Orientation [degree from north, counterclockwise] :
0.913351005341
Compactness Coefficient : 5.61379074702
Circularity Ratio : 0.313175157621
Topological Diameter : 105.0
Elongation Ratio : 0.469323448397
Shape Factor : 1.16602561484
Concentration Time (Giandotti, 1934) [hr] : 3.53310944404
Length of Mainchannel [km] : 6.74021428
Mean slope of mainchannel [percent] : 1.202028
Mean hillslope length [m] : 5932.153
Magnitudo : 415.0
Max order (Strahler) : 5
Number of streams : 612
Total Stream Length [km] : 80.8272
First order stream frequency : 52.8039367562
Drainage Density [km/km^2] : 10.2843237518
Bifurcation Ratio (Horton) : 5.0940
Length Ratio (Horton) : 2.1837
Area ratio (Horton) : 5.6571
Slope ratio (Horton): 1.4418

The hypsographic curve provides the distribution of the areas at different altitudes. Each point on the hypsographic curve has on the y-axis the altitude and on the x-axis the percentage of basin surface placed above that altitude. The hypsometric curve has the same shape but is dimensionless. Quantiles of the hypsometric curve are displayed: 

Tot. cells 78593.0
===========================
Hypsometric | quantiles
===========================
145 | 0.025
143 | 0.05
141 | 0.1
137 | 0.25
129 | 0.5
119 | 0.75
110 | 0.9
100 | 0.975

The width function W(x) gives the area of the cells in the basin at a certain flow distance x from the outlet (distance-area function). Note that the distance is not intended in the euclidean sense, but it's calculated considering the hydrological path of the water. 

Tot. cells 78593.0
Tot. area 7859300.0
Max distance 6769.341392
===========================
Width Function | quantiles
===========================
801 | 0.05
1507 | 0.15
2166 | 0.3
2572 | 0.4
2958 | 0.5
3629 | 0.6
4184 | 0.7
5132 | 0.85
6089 | 0.95

The output of r.stream.stats is also displayed: 

 
Summary:
Max order | Tot.N.str. | Tot.str.len. | Tot.area. | Dr.dens. | Str.freq. 
  (num)   |    (num)   |     (km)     |   (km2)   | (km/km2) | (num/km2) 
        5 |        612 |      80.8272 |    7.8593 |  10.2843 | 77.8695 

Stream ratios based on regression coefficient:
 Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt. 
  5.0940 |  2.1837 |   5.6571 |  1.4418 |  1.5420

Averaged stream ratios with standard deviations:
 Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt. 
  5.5417 |  2.6271 |   5.1916 |  1.4625 |  1.6693
  3.5678 |  1.9342 |   4.3638 |  0.1448 |  0.6477

Order | Avg.len |  Avg.ar  |  Avg.sl |  Avg.grad. | Avg.el.dif
 num  |   (km)  |  (km2)   |  (m/m)  |    (m/m)   |     (m)   
    1 |  0.0880 |   0.0100 |  0.0428 |     0.0331 |  3.1995
    2 |  0.2025 |   0.0501 |  0.0303 |     0.0250 |  5.3206
    3 |  0.5337 |   0.2538 |  0.0212 |     0.0177 |  8.5684
    4 |  2.7421 |   2.7104 |  0.0159 |     0.0136 | 25.1265
    5 |  1.1871 |   7.8593 |  0.0095 |     0.0051 |  6.1054

Order | Std.len |  Std.ar  |  Std.sl |  Std.grad. | Std.el.dif
 num  |   (km)  |  (km2)   |  (m/m)  |    (m/m)   |     (m)   
    1 |  0.0771 |   0.0082 |  0.0362 |     0.0275 |  3.5790
    2 |  0.1841 |   0.0398 |  0.0185 |     0.0145 |  5.6062
    3 |  0.6182 |   0.2493 |  0.0131 |     0.0120 |  8.5329
    4 |  2.8546 |   3.1286 |  0.0062 |     0.0085 | 15.5228
    5 |  0.0000 |   0.0000 |  0.0000 |     0.0000 |  0.0000

Order | N.streams | Tot.len (km) | Tot.area (km2)
    1 |       490 |      43.1013 |  4.8895
    2 |        98 |      19.8470 |  4.9085
    3 |        21 |      11.2077 |  5.3290
    4 |         2 |       5.4841 |  5.4207
    5 |         1 |       1.1871 |  7.8593

Order | Bif.rt. | Len.rt. | Area.rt. | Slo.rt. | Grd.rt. | d.dens. | str.freq.
    1 |  5.0000 |  2.3024 |   0.0000 |  1.4154 |  1.3236 |  8.8151 | 100.2147
    2 |  4.6667 |  2.6353 |   5.0194 |  1.4279 |  1.4086 |  4.0434 | 19.9654
    3 | 10.5000 |  5.1378 |   5.0664 |  1.3358 |  1.3065 |  2.1031 |  3.9407
    4 |  2.0000 |  0.4329 |  10.6807 |  1.6710 |  2.6385 |  1.0117 |  0.3690
    5 |  0.0000 |  0.0000 |   2.8997 |  0.0000 |  0.0000 |  0.1510 |  0.1272

Maps

Since r.basin performs the delimitation of the river basin, all the maps produced are cropped over the basin. They are:

  • Raster maps
g.list rast

out_elevation_accumulation              out_elevation_hillslope_distance
out_elevation_aspect                    out_elevation_horton
out_elevation_dist2out                  out_elevation_shreve
out_elevation_drainage                  out_elevation_slope
out_elevation_hack                      out_elevation_strahler
  • Slope

    Slope

  • Aspect

    Aspect

  • Flow direction

    Flow direction

  • Flow accumulation

    Flow accumulation

  • Distance to outlet (width function)

    Distance to outlet (width function)

  • Length of hillslopes

    Length of hillslopes

  • Stream network ordered according to Strahler

    Stream network ordered according to Strahler

  • Stream network ordered according to Horton

    Stream network ordered according to Horton

  • Stream network ordered according to Shreve

    Stream network ordered according to Shreve

  • Stream network ordered according to Hack

    Stream network ordered according to Hack

  • Vector maps
g.list vect

out_elevation_basin       out_elevation_network
out_elevation_mainchannel out_elevation_outlet
out_elevation_outlet_snap
  • Basin

    Basin

  • Main channel

    Main channel

  • Stream network

    Stream network

  • Outlet

    Outlet

The vector map out_elevation_outlet_snap has a table associated, that stores all the parameters calculated. The outlet_snap is the outlet moved to the nearest river network, and can slightly differ from the outlet given by the coordinates pair, in case this latter doesn't fall on the (calculated) river network.

Graphics

Graphics are stored in the working directory:

  • out_elevation_ipsographic.png
  • out_elevation_ipsometric.png
  • out_elevation_width_function.png
  • Ipsographic curve

    Ipsographic curve

  • Ipsometric curve (Nondimensional ipsographic curve)

    Ipsometric curve (Nondimensional ipsographic curve)

  • Width function

    Width function

Known issues

  1. r.basin hasn't been designed for working in lat/long coordinates. This means that if you are working in lat/long coordinates, you need to reproject your map first in order to apply the tool.
  2. r.basin is designed to work in meters unit. The values that you get using feet are nonsense.
  3. r.basin does not handle overwrite. You need to delete the output products already created (maps, text file, figures) by hand before running it again.

r.basin for GRASS 6.4

r.basin was initially designed to run in grass 6.4, but in G7, r.basin has been improved and bugs were fixed, so it is strongly advised to upgrade to G7. The usage in G6 is: 

r.basin [-ac] map=name prefix=prefix easting=east northing=north [threshold=threshold]


See also

R.stream.*

References

  • Di Leo Margherita, Di Stefano Massimo, An Open-Source Approach for Catchment's Physiographic Characterization, In: Proceedings of AGU Fall Meeting 2013, S.Francisco, CA, USA.
  • Di Leo Margherita, Working report: Extraction of morphometric parameters from a digital elevation model - Panama. North Carolina State University, 2010 (PDF)
  • Di Leo M., Di Stefano M., Claps P., Sole A., Caratterizzazione morfometrica del bacino idrografico in GRASS GIS (Morphometric characterization of the catchment in GRASS GIS environment), Geomatics Workbooks n.9, 2010. (PDF).
  • Rodriguez-Iturbe I., Rinaldo A., Fractal River Basins, Chance and Self-Organization. Cambridge Press, 2001.
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