GRASS and Sextante: Difference between revisions

Revision as of 23:28, 25 October 2013

GRASS has been integrated into SEXTANTE as extension. SEXTANTE itself is commonly used within gvSIG and QGIS. Through this integration, gvSIG and QGIS users have access to the wealth of well tested algorithms provided by GRASS GIS.

SEXTANTE in gvSIG

As of today the easiest and best alternative to use GRASS in SEXTANTE is within gvSIG Community Edition (CE). gvSIG CE is a community driven Open Source GIS project based on gvSIG OADE bundled with SEXTANTE. Both teams (SEXTANTE and gvSIG CE) have decided to unite forces and will be, from now on, sharing their development policies and strategies (http://sextantegis.blogspot.com/2011/12/important-notice-for-gvsig-users.html). Developers of gvSIG OADE and SEXTANTE are working together in gvSIG CE.

gvSIG CE includes SEXTANTE, neither installation of SEXTANTE nor configuration to use GRASS is needed. A technical preview of the upcoming gvSIG Community Edition 1.0 is available for download here. It includes a SEXTANTE snapshot from 08/28/2011. This is a zero-install distribution. Simply unpack it somewhere on your harddisk and start it.

The information described below will help you if you would like to use GRASS in gvSIG OADE or in gvSIG 1.10.

Note: the GDAL-GRASS plugin must be installed.

SEXTANTE in QGIS 1.x - Processing in QGIS 2.x

In QGIS < 2.0 the SEXTANTE package is an optional Python plugin.

From QGIS 2.0 onwards (i.e. incl. 1.9-dev), SEXTANTE is now a core module of QGIS called "Processing". One of its providers can be GRASS GIS (on Windows is it packaged)

Installation

Both gvSIG and QGIS support SEXTANTE which itself offers a smooth GRASS GIS integration.

In QGIS: Sextante plugin/Processing with GRASS GIS support

QGIS 1.x:

Since 2012, the Sextante plugin for QGIS 1.x is available. Just get it through the QGIS plugin manager (Fetch plugins --> Sextante).

QGIS 2.x:

This way of using GRASS in QGIS is superior to the QGIS-GRASS toolbox, unless your data is already in a GRASS database, since the creation and management of the GRASS location is handled automatically by Sextante. This leads to a seamless integration, using GRASS GIS as powerful backend to QGIS.

QGIS 2 with GRASS GIS support in "Processing" (former Sextante)

In gvSIG: How to install the improved gvSIG OADE version

From version gvSIG OA Digital Edition 2010 (1.0) onwards, Sextante 0.6 with integrated GRASS GIS support is included.

You can download and install OADE gvSIG binaries from here.

Note 1: If you are on a 64bit system, add this to your settings file, e.g. $HOME/.bashrc:

 # 32bit fix
 export LD_LIBRARY_PATH=$HOME/gvsig-oade-2010-1.0.0/grass/lib/

Note 2: If you want to use latest GRASS 6.4 rather than the bundled version, you have two options:

you can install or use an already installed version by pointing to the right path in the Sextante setup (see below);
you can replace the included grass/ version in the gvsig-oade-2010-1.0.0/ directory. For example, get latest Linux 32bit GRASS binaries here. Likewise, for MacOSX (or Windows).

In gvSIG: Alternative: How to install the original gvSIG version

From gvSIG 1.10 onwards, Sextante with integrated GRASS GIS support is included (which yet fails):

download gvSIG binaries from here (download the All-included version)
run the installer
start gvSIG

Activating GRASS GIS in Sextante

(modified after grass_sextante.html)

Configuring Sextante to use GRASS takes just a few easy steps. Once you have configured the system, you will be able to execute GRASS algorithms from any Sextante component like the toolbox or the graphical modeller, just like you do with any other Sextante geo-algorithm.

Only two parameters must be set, namely:

The path to the GRASS installation folder. It is needed by Sextante to execute GRASS commands.
The path to a GRASS mapset. Sextante is able to use a temporary mapset.

So we do the simple setup:

Open the Sextante Toolbox icon
Go to Sextante settings (open icon -> right of the "Search" bar at bottom of the window)
Go to "GRASS". Set therein
- GRASS folder: /path/to/grass-binary-installation/ (e.g., /usr/local/grass-6.4.3/ )
- Activate "Create temporary mapset"
Click on "Setup GRASS" to register the raster and vector commands
Now click on the "Help" button to know that it is there and what it contains
Finally click "OK" to leave the dialog. Now 5xx Sextante/GRASS commands should be available

Alternative: edit the settings in the configuration file:

 $HOME/.qgis/sextante/sextante_qgis.conf

How to use

Note that GRASS is used in an internal temporary session (so you cannot open GRASS data but work on GeoTIFF, SHAPE files using GRASS through gvSIG/Sextante).

Getting sample data

A sample dataset (based on free North Carolina dataset, packaged by B. Ducke) is coming with the gvSIG-OADE installer. Otherwise, if you prefer, you can also download and unpack it manually from here.

This data set contains several raster and vector map files. The projection is (EPSG code 32119).

Sample session

Start a new project: "File" -> "New Project" -> Click on the new name -> "Open" button
Set the projection of the View: "View" -> "Properties" -> "Current projection" -> "Type:" select "EPSG" -> Enter code: "32119" -> Click on "Search" -> Click on "OK" -> Accept Properties with "OK"

Vector points map interpolation

Add a vector points map with the "Add layer" icon (top menu): File -> "Add" -> Select file "geodetic_pts.shp" -> "OK"
Zoom to a portion of the map
Open Sextante dialog
Go to "GRASS", expand "Vector (v.*)"
Select "v.surf.idw" (double click)
1. The SHAPE file "geodetic_pts.shp" should be preselected. Enter as column name "elevation".
2. Go to the region tab and select "Use extent from view".
3. Enter "Cell size": 1000 (this is in map units, here: meters)
4. Click "OK" to run the computation
The resulting IDW interpolated raster map should appear in the view.

gvSIG-Sextante-GRASS GIS: IDW interpolated geodetic points, North Carolina, USA

Raster map analysis: Create topographic index map from elevation map

Add a raster elevation map with the "Add layer" icon (top menu): File -> "Add" -> Select File Type "Raster" -> Select file "north_carolina/wake/wake_elevation.tif" -> "OK", "Accept" projection.
"Zoom to layer" with right mouse button in the legend
Open Sextante dialog
Go to "GRASS", expand "Raster (r.*)"
Go to "r.topidx"
1. Start (double click) r.topidx, the map "wake_elevation.tif" should be predefined, as output write "wake_topidx.tif" (it will go into your current directory; check with browse button),
2. Go to the region tab and select "Use extent from view".
3. Enter "Cell size": 10 (this is in map units, here: meters)
4. Click "OK" to run the computation
It should have generated a new map which should appear in the view.

gvSIG-Sextante-GRASS GIS: Topographic index map from elevation map, North Carolina, USA

Vector map dissolving using a string attribute column (GRASS via Sextante in QGIS)

The ZIP code map of Raleigh, NC is used in this example. The vector polygon map can be dissolved with an attribute column (here: by selecting the ZIPNAME column):

GRASS via Sextante in QGIS: Vector map dissolving using a string attribute column, North Carolina, USA. Original map and dissolved result are overlayed with transparency

Troubleshooting

GRASS GIS Manual pages are not shown, error "Grass help folder is not correctly configured. Please configure it":

In QGIS, you need to define the path in Analysis -> SEXTANTE options -> GRASS commands -> GRASS help folder.

Double-click the line to enter a path

Example (path may differ according to your installation):

Setting the GRASS help manual folder in QGIS-Sextante

Sextante on Mac OS X: a working solution for running GRASS commands

See http://lists.osgeo.org/pipermail/qgis-user/2012-July/018180.html

@@ Line 146: / Line 146: @@
 * http://code.google.com/p/sextante/
 * HOWTO adding own GRASS algorithms to Sextante (simply by adding a new description file):
-: https://github.com/qgis/Quantum-GIS/blob/master/python/plugins/sextante/grass/grass.txt
+: https://github.com/qgis/QGIS/blob/master/python/plugins/processing/grass/grass.txt
 References: