GRASS Debugging

The following hints assume to work on a working-copy of the GRASS CVS directory.

Additionally it is good to have set the debbugging symbols during compile-time. Do not strip the libraries or use optimization in the compile. see INSTALL and doc/debugging.txt in the source code for more information.

Setting GRASS-environment variables (numbers: 1-5)

g.gisenv set="DEBUG=1"

• A higher debug level means you see more messages.
• These messages are always present regardless of compiler settings.

Using GDB

The GNU Debugger may be used to diagnose Segmentation Faults and other weirdness.

Compile Time Setup

To add debugging information into the built binary, add -g to the CFLAGS arguments.

CFLAGS="-ggdb -Wall -Werror-implicit-function-declaration" ./configure ...

Do not use -O for optimization and do not strip the binaries with LDFLAGS="-s".

Using gdb on command line

• Running a program inside GDB works (installation of GDB required :-)

(e.g. on Debian GNU/Linux: apt-get install gdb)

• Use the exact module name on the command line (at the GRASS prompt) without arguments. Put any command line arguments on the (gdb) command line after the word run.

 gdb `which v.in.ogr`
 run "out=some_map dsn="PG:dbname=postgis user=me" olayer=postgislayer"

• when it crashes, type "bt full" for a full backtrace
• type "l" to list where in the source code it got to
• type "frame 2" to switch to the second level function (see the backtrace), there you can again type "l" to see where it got up to.

or you can optionally add arguments to gdb directly on the commandline:

 gdb --args v.in.ogr out=bla dsn="PG:dbname=postgis user=me" olayer=postgislayer

• Attaching to child process:

use "attach <pid>" to attach to an existing process (needed for DBMI debugging etc).

Using gdb within GNU Emacs

• start GNU Emacs within GRASS session, e.g.

emacs general/manage/cmd/remove.c

• create second buffer by C-x 2

• move cursor to the second buffer by C-x o, then M-x gdb, Enter
• type module name which you would like to debug, e.g. g.remove, Enter

• now you can use gdb inside GNU Emacs

File:Emacs-gdb-3.png

Using DDD (gdb graphical frontend)

• running a program inside DDD works (installation of ddd and gdb required :-), (on Debian GNU/Linux: apt-get install gdb ddd)

ddd `which v.in.ogr`

http://mpa.itc.it/markus/grass61/debugging/crash_1_small.jpg

• Run (from main menu PROGRAM): "out=bla dsn="PG:dbname=postgis user=me" olayer=postgislayer"

http://mpa.itc.it/markus/grass61/debugging/ddd_1_small.jpg

• run with parameters
• when it crashes, use the UP menu item to trace back

http://mpa.itc.it/markus/grass61/debugging/ddd_2_going_up_small.jpg

• reach the line where it crashed
• set a breakpoint, then run again to stop before the crash

http://mpa.itc.it/markus/grass61/debugging/ddd_3_breakpoint_small.jpg

• right mouse button on variables permits to display them etc.

http://mpa.itc.it/markus/grass61/debugging/ddd_4_displ_vars_small.jpg

• figure out why it crashed there. This requires PATIENCE. But you will nearly save the world if you identify the problem :-)

Using kdbg (gdb graphical frontend)

• kdbg is not unlike DDD, but it's a KDE application.
• Use is similar to DDD.
• Start with (within GRASS):

kdbg `which g.module`

• Fill in command line arguments with menu item Execution->Arguments.
• Open the View->Locals window.
• Click the Run icon (or Execution->Run) and see where it breaks.
• Set pause-points by clicking a red stop-sign to the left of the "+" on a line of the source code. From there you can step through instructions.
• Explore the values of variables in the locals window.

Using ldd

ldd will show the shared library dependencies for a program or library. For example:

For a module:

GRASS> ldd `which v.in.ogr`

For a library:

$ ldd /usr/src/grass/grass-6.2.2/dist.i686-pc-linux-gnu/lib/libgrass_gis.so

The output looks like this:

       libz.so.1 => /usr/lib/libz.so.1 (0x40077000)
       libgrass_datetime.so => not found
       libc.so.6 => /lib/libc.so.6 (0x4008a000)
       /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x80000000)

In the above example libgrass_datetime.so is missing causing an Illegal Instruction error in libgis. A common error occurs when there are more than one versions of a support library installed, and the GRASS build is using the wrong one. ldd is good for spotting this.

Library search path

If a support library like libgdal can't be found, and you are sure it is installed, make sure the library search path is set correctly. For example in Linux if GDAL was installed to /usr/local, add the line "/usr/local/lib" to the /etc/ld.so.conf file, and as root run ldconfig to rebuild the library links and cache.

Alternatively you can add the library path to the $LD_LIBRARY_PATH environmental variable.

Using strace

• running the command through strace could give you another hint what is going wrong somewhere.

For example:

strace v.in.ogr out=your_map dsn="PG:dbname=postgis user=me" olayer=postgislayer

Using Valgrind

• Valgrind is a tool to check for memory leaks

(Insert howto here)

Examples:

• analysis of heap usage

CMD="v.in.ascii -zt z=3 in=lidaratm2_250k.txt out=lidaratm2_250k fs=,"
valgrind --tool=massif --format=html  $CMD --o

• analysis of memory leaks

Quick addrcheck tool

valgrind -v --tool=addrcheck --leak-check=yes  $CMD

Full memcheck tool, including non-orphaned, but left over, allocated memory

valgrind --tool=memcheck --leak-check=yes --show-reachable=yes  $CMD --o

• Valgrind can create PostScript output charts. To convert PostScript to PNG:

('pstoimg' is part of the latex2html Debian package)

pstoimg -aaliastext -flip r90 -out massif.550.png -scale 1.3 -crop a massif.550.ps

Using Electric Fence

• Electric Fence checks for bad memory writes, ie specific malloc() over-runs and under-runs.

(Insert howto here)

Example:

CMD="gdalwarp -tps -srcnodata 255 -dstnodata 255 \
       -of GTiff -rcs "$TMP".tif "$OUTFILE"_warp"
LD_PRELOAD=libefence.so.0.0 $CMD

Using a profiling tool

A profiling tool may be used to identify the bottlenecks in long running processes.

• kcachegrind is a visualization tool for Valgrind's calltree profiling skin.

(Insert howto here)

• gcc / gdb profiling

(Insert howto here)

Skimming the ChangeLog for changes

• use the tool cvs2cl.pl for generating a local changelog-file

(it can be found in the tools/ directory in the GRASS 6 source code)